Category: pyrimidines

Brun, Omar published the artcileSelective derivatization of N-terminal cysteines using cyclopentenediones, Name: 2-(N-(2-((((9H-Fluoren-9-yl)methoxy)carbonyl)amino)ethyl)-2-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)acetamido)acetic acid, the publication is Organic Letters (2016), 18(19), 4836-4839, database is CAplus and MEDLINE.

The outcome of the Michael-type reaction between thiols and 2,2-disubstituted cyclopentenediones (CPDs) varies depending on the thiol. Stable compounds with two fused rings were formed upon reaction with 1,2-aminothiols (such as N-terminal cysteines in peptides). Other thiols gave reversibly Michael-type adducts that were in equilibrium with the starting materials. This differential reactivity allows differently placed cysteines to be distinguished and has been exploited to prepare bioconjugates incorporating two or three different moieties.

Organic Letters published new progress about 169396-92-3. 169396-92-3 belongs to pyrimidines, auxiliary class Pyrimidine,Carboxylic acid,Amine,Amide,Others,PNA, name is 2-(N-(2-((((9H-Fluoren-9-yl)methoxy)carbonyl)amino)ethyl)-2-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)acetamido)acetic acid, and the molecular formula is C26H26N4O7, Name: 2-(N-(2-((((9H-Fluoren-9-yl)methoxy)carbonyl)amino)ethyl)-2-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)acetamido)acetic acid.

Referemce:
https://pubchem.ncbi.nlm.nih.gov/compound/Pyrimidine,
Pyrimidine – Wikipedia

Brun, Omar published the artcileSelective derivatization of N-terminal cysteines using cyclopentenediones, COA of Formula: C39H35N5O8, the publication is Organic Letters (2016), 18(19), 4836-4839, database is CAplus and MEDLINE.

The outcome of the Michael-type reaction between thiols and 2,2-disubstituted cyclopentenediones (CPDs) varies depending on the thiol. Stable compounds with two fused rings were formed upon reaction with 1,2-aminothiols (such as N-terminal cysteines in peptides). Other thiols gave reversibly Michael-type adducts that were in equilibrium with the starting materials. This differential reactivity allows differently placed cysteines to be distinguished and has been exploited to prepare bioconjugates incorporating two or three different moieties.

Organic Letters published new progress about 186046-81-1. 186046-81-1 belongs to pyrimidines, auxiliary class Pyrimidine,Carboxylic acid,Amine,Benzene,Amide,Others,PNA,, name is 2-(N-(2-((((9H-Fluoren-9-yl)methoxy)carbonyl)amino)ethyl)-2-(4-(((benzhydryloxy)carbonyl)amino)-2-oxopyrimidin-1(2H)-yl)acetamido)acetic acid, and the molecular formula is C39H35N5O8, COA of Formula: C39H35N5O8.

Referemce:
https://pubchem.ncbi.nlm.nih.gov/compound/Pyrimidine,
Pyrimidine – Wikipedia

Mamtimin, Xirali published the artcileSynthesis, characterization and acidochromism of Poly(2-N,N-dimethylamino-4,6-Bis(2-thienyl)-pyrimidine), SDS of cas: 56-05-3, the publication is Journal of Polymer Research (2011), 18(1), 105-109, database is CAplus.

A new monomer (2-N,N-dimethylamino-4,6-bis(2-thienyl)-pyrimidine) was synthesized and its homopolymer was successfully prepared by using Ferric trichloride (FeCl₃) as an oxidant. The structure of the polymer and monomer was fully characterized by ¹H-NMR, FTIR, UV-vis, Fluorescent spectroscopy and X-ray diffraction pattern. The polymer gives rise to a band at λ _max = 391 nm. The polymer showed the PL spectrum, gave a peak at 507 nm. We have observed that the polymer was sensitive to inorganic acids and the acidochromism behavior was investigated applying organic acid such as CF₃COOH. The corresponding UV-Vis peaks were observed at 464 nm and 357 nm resp. X-ray diffraction data shows that polymer has a certain crystallinity. The polymer exhibited an [η] value of 0.26 dLg^-1 at 25° in H₂SO₄ (w = 98%).

Journal of Polymer Research published new progress about 56-05-3. 56-05-3 belongs to pyrimidines, auxiliary class Pyrimidine,Chloride,Amine,API, name is 2-Amino-4,6-dichloropyrimidine, and the molecular formula is C4H3Cl2N3, SDS of cas: 56-05-3.

Referemce:
https://pubchem.ncbi.nlm.nih.gov/compound/Pyrimidine,
Pyrimidine – Wikipedia

Sreenivas, B. published the artcileSynthesis and biological evaluation of pyrimidine analogs as potential antimicrobial agents, Category: pyrimidines, the publication is International Journal of Pharmacy and Pharmaceutical Sciences (2012), 4(2), 306-310, database is CAplus.

Amino and halogenated pyrimidines were synthesized and screened for biol. activity. All the compounds showed broad spectrum of activity against Staphylococcus epidermidis, tested fungal species and moderate activity towards other tested species. The compound 2-amino-4-bromopyrimidine was the most potent with good efficacy against S. epidermidis and 4-chloropyrimidine-5-carboxylic acid against fungal species.

International Journal of Pharmacy and Pharmaceutical Sciences published new progress about 56-05-3. 56-05-3 belongs to pyrimidines, auxiliary class Pyrimidine,Chloride,Amine,API, name is 2-Amino-4,6-dichloropyrimidine, and the molecular formula is C12H9N3O4, Category: pyrimidines.

Referemce:
https://pubchem.ncbi.nlm.nih.gov/compound/Pyrimidine,
Pyrimidine – Wikipedia

Wang, Xiaolun published the artcileIdentification of MRTX1133, a Noncovalent, Potent, and Selective KRAS^G12D Inhibitor, Category: pyrimidines, the publication is Journal of Medicinal Chemistry (2022), 65(4), 3123-3133, database is CAplus and MEDLINE.

KRAS^G12D, the most common oncogenic KRAS mutation, is a promising target for the treatment of solid tumors. However, when compared to KRAS^G12C, selective inhibition of KRAS^G12D presents a significant challenge due to the requirement of inhibitors to bind KRAS^G12D with high enough affinity to obviate the need for covalent interactions with the mutant KRAS protein. Here, we report the discovery and characterization of the first noncovalent, potent, and selective KRAS^G12D inhibitor, MRTX1133, which was discovered through an extensive structure-based activity improvement and shown to be efficacious in a KRAS^G12D mutant xenograft mouse tumor model.

Journal of Medicinal Chemistry published new progress about 2454397-75-0. 2454397-75-0 belongs to pyrimidines, auxiliary class Aromatic Fluorinated Building Blocks, name is 7-Chloro-8-fluoropyrido[4,3-d]pyrimidine-2,4(1H,3H)-dione, and the molecular formula is C19H10Br2N2, Category: pyrimidines.

Referemce:
https://pubchem.ncbi.nlm.nih.gov/compound/Pyrimidine,
Pyrimidine – Wikipedia

Silva, F. published the artcileSite- and bond-selective H- formation in methylated pyrimidine bases driven by potassium-molecule collisions, Category: pyrimidines, the publication is Journal of Physics: Conference Series (2012), 388(Part 1), 012040/1-012040/6, database is CAplus.

Electron transfer in alkali-mol. collisions to gas phase thymine and uracil yielding H- formation is selectively controlled in the energy range between 5 and 65 eV. By tuning the collision energy, electron transfer from the alkali to methylated thymine (at the N1 position), methylated uracil (at the N3 position) and partly deuterated thymine, enables H-formation. Such process proceeds not only through the breaking of the (C-H) against (N-H) bonds but also through N1 against N3 sites. Such selectivity, as far as bond and site are concerned, is here reported for the first time in collision induced dissociation experiments by alkali-mol. interactions.

Journal of Physics: Conference Series published new progress about 608-34-4. 608-34-4 belongs to pyrimidines, auxiliary class Pyrimidine,Amide, name is 3-Methylpyrimidine-2,4(1H,3H)-dione, and the molecular formula is C17H14O5, Category: pyrimidines.

Referemce:
https://pubchem.ncbi.nlm.nih.gov/compound/Pyrimidine,
Pyrimidine – Wikipedia

Silva, F. published the artcileSite and bond selective H- formation in methylated pyrimidine bases driven by potassium molecule collisions, Category: pyrimidines, the publication is Journal of Physics: Conference Series (2012), 388(Part 10), 102032/1, database is CAplus.

In this study we present for the first time site (N₁-H/N₃-H) and bond (N-H/C-H) selectivity of H- formation in 1-methylthymine, 3-methyluracil and deuterated thymine (C positions) triggered by potassium mol. collisions. By comparing the H loss of these mols. with H loss in thymine and uracil and setting the energy one can predict site and bond selectivity in these set of mols.

Journal of Physics: Conference Series published new progress about 608-34-4. 608-34-4 belongs to pyrimidines, auxiliary class Pyrimidine,Amide, name is 3-Methylpyrimidine-2,4(1H,3H)-dione, and the molecular formula is C23H43NP2, Category: pyrimidines.

Referemce:
https://pubchem.ncbi.nlm.nih.gov/compound/Pyrimidine,
Pyrimidine – Wikipedia

Roeglin, Lars published the artcileDNA and RNA-controlled switching of protein kinase activity, Computed Properties of 186046-81-1, the publication is ChemBioChem (2009), 10(4), 758-765, database is CAplus and MEDLINE.

Protein switches use the binding energy gained upon recognition of ligands to modulate the conformation and binding properties of protein segments. We explored whether the programmable nucleic acid mediated recognition might be used to design or mimic constraints that limit the conformational freedom of peptide segments. The aim was to design nucleic acid-peptide conjugates in which the peptide portion of the conjugate would change the affinity for a protein target upon hybridization. This approach was used to control the affinity of a PNA-phosphopeptide conjugate for the signal transduction protein Src kinase, which binds the cognate phosphopeptides in a linear conformation. Peptide-nucleic acid arms were attached to known peptide binders. The chimeric mols. were studied in three modes: (1) as single strands, (2) constrained by intermol. hybridization (duplex formation) and (3) constrained by intramol. hybridization (hairpin formation). Of note, duplexes that were designed to accommodate bulged peptide structures (for example, in hairpins or bulges) had lower binding affinities than duplexes in which the peptide was allowed to adopt a more relaxed conformation. Greater than 90-fold differences in binding affinities were observed It was, thus, feasible to make use of DNA hybridization to reversibly switch from no to almost complete inhibition of Src-SH2-peptide binding, and vice versa. A series of DNA and PNA-based hybridization experiments revealed the importance of charges and conformational effects. Nucleic acid mediated switching was extended to the use of RNA; this enabled a regulation of the enzymic activity of the Src kinase. The proof-of-principle results demonstrate for the first time that PNA-peptide chimeras can transduce changes of the concentration of a given RNA mol. to changes of the activity of a signal transduction enzyme.

ChemBioChem published new progress about 186046-81-1. 186046-81-1 belongs to pyrimidines, auxiliary class Pyrimidine,Carboxylic acid,Amine,Benzene,Amide,Others,PNA,, name is 2-(N-(2-((((9H-Fluoren-9-yl)methoxy)carbonyl)amino)ethyl)-2-(4-(((benzhydryloxy)carbonyl)amino)-2-oxopyrimidin-1(2H)-yl)acetamido)acetic acid, and the molecular formula is C39H35N5O8, Computed Properties of 186046-81-1.

Referemce:
https://pubchem.ncbi.nlm.nih.gov/compound/Pyrimidine,
Pyrimidine – Wikipedia

Ribeiro da Silva, Manuel A. V. published the artcileExperimental study on the thermochemistry of some amino derivatives of uracil, COA of Formula: C5H6N2O2, the publication is Journal of Chemical Thermodynamics (2011), 43(11), 1763-1767, database is CAplus.

Values of the standard (p = 0.1 MPa) molar enthalpy of combustion, ΔcHm , of four crystalline compounds: 5-aminouracil, 6-aminouracil, 6-amino-1-methyluracil, and 6-amino-1,3-dimethyluracil, were determined, at T = 298.15 K, using a static bomb combustion calorimeter. The values obtained of standard molar enthalpy of combustion were used to derive the standard molar enthalpy of formation of the compounds investigated in their condensed phase and together with literature values of the standard molar enthalpy of sublimation, yielded the standard molar enthalpies of formation in the gaseous phase. These are discussed in terms of the effects of the mol. structure on the relative enthalpic stability.

Journal of Chemical Thermodynamics published new progress about 608-34-4. 608-34-4 belongs to pyrimidines, auxiliary class Pyrimidine,Amide, name is 3-Methylpyrimidine-2,4(1H,3H)-dione, and the molecular formula is C5H6N2O2, COA of Formula: C5H6N2O2.

Referemce:
https://pubchem.ncbi.nlm.nih.gov/compound/Pyrimidine,
Pyrimidine – Wikipedia

Sabale, Pramod M. published the artcileClickable PNA Probes for Imaging Human Telomeres and Poly(A) RNAs, SDS of cas: 169396-92-3, the publication is ACS Omega (2018), 3(11), 15343-15352, database is CAplus and MEDLINE.

The ability to bind strongly to complementary nucleic acid sequences, invade complex nucleic acid structures and resist degradation by cellular enzymes has made peptide nucleic acid (PNA) oligomers as very useful hybridization probes in mol. diagnosis. For such applications, the PNA oligomers have to be labeled with appropriate reporters as they lack intrinsic labels that can be used in biophys. assays. While solid-phase synthesis is commonly used to attach reporters onto PNA, development of milder and modular labeling methods will provide access to PNA oligomers labeled with a wider range of biophys. tags. Here, the authors describe the establishment of a post-synthetic modification strategy based on bioorthogonal chem. reactions in functionalizing PNA oligomers in solution with variety of tags. A toolbox composed of alkyne- and azide-modified monomers were site-specifically incorporated into PNA oligomers and post-synthetically click-functionalized with various tags ranging from sugar, amino acid, biotin and fluorophores by using copper(I)-catalyzed azide-alkyne cycloaddition, strain-promoted azide-alkyne cycloaddition and Staudinger ligation reactions. As a proof of utility of this method, fluorescent PNA hybridization probes were developed and used in imaging human telomeres in chromosomes and poly(A) RNAs in cells. Taken together, this simple approach of generating a wide range of functional PNA oligomers will expand the use of PNA in mol. diagnosis.

ACS Omega published new progress about 169396-92-3. 169396-92-3 belongs to pyrimidines, auxiliary class Pyrimidine,Carboxylic acid,Amine,Amide,Others,PNA, name is 2-(N-(2-((((9H-Fluoren-9-yl)methoxy)carbonyl)amino)ethyl)-2-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)acetamido)acetic acid, and the molecular formula is C26H26N4O7, SDS of cas: 169396-92-3.

Referemce:
https://pubchem.ncbi.nlm.nih.gov/compound/Pyrimidine,
Pyrimidine – Wikipedia